Pie chart

Tip

notes on preparing your dataset!!

• please always use TAB to separate the modifiers and their values.
• some modifiers should not be used in combination, e.g. !area and !radius are mutually exclusive.
• However if both are used (accidentally), only the last one will be used.
• if a modifier is used (accidentally) multiple tiles, only the last one will be used.
• the "data" part of this dataset can only contain two columns of tab-delimited texts; the third column, if presents, will be ignored

Related modifiers

(not all datasets support these modifiers)

Key (case insensitive)	Value	Description
!minradius	any float number > 0	minimal pixel radius of the pies
!maxradius	any float number > 0	maximal pixel radius of the pies
!area	none	use user inputs as the areas of the pie charts
!radius	none	use user inputs as the radiuses of the pie charts

Tree

((((((((((Saccharomyces_cerevisiae:0.054377,Saccharomyces_paradoxus:0.039196)Saccharomyces_subclade:0.035915,Saccharomyces_mikatae:0.082075)Saccharomyces_subclade:0.054132,Saccharomyces_bayanus:0.128022)Saccharomyces:0.485857,Candida_glabrata:0.874698)Saccharomycetaceae_subclade:0.060179,Naumovia_castellii:0.761269)Saccharomycetaceae_subclade:0.182516,(Lachancea_waltii:0.700985,(Kluyveromyces_lactis:0.770604,Agossypii:0.758273)Kluyveromyces:0.118441)Saccharomycetaceae_subclade:0.146942)Saccharomycetaceae:1.069627,(Debaryomyces_hansenii:0.591048,Candida_albicans:0.851762)Saccharomycetales_subclade:0.866539)Saccharomycetales_subclade:0.844816,Yarrowia_lipolytica:1.745091)Saccharomycetales:0.650477,(Emericella_nidulans:0.618015,(Magnaporthe_grisea:0.446021,(Neurospora_crassa:0.412753,Gibberella_zeae:0.414866)Sordariomycetes_subclade:0.071418)Sordariomycetes:0.318914)Pezizomycotina:0.873484)Ascomycota_subclade:0.955079,Schizosaccharomyces_pombe:0.952249);

Example

Example 1

## for evolview; Yeast
!Groups	WGD,SSD
!colors	#9F0251,#4D8963
!legendstyle	circle
!title	Duplication mechanism
!opacity	0.8
Saccharomyces_cerevisiae,Saccharomyces_paradoxus	0,19
Saccharomyces_cerevisiae,Saccharomyces_mikatae	0,20
Saccharomyces_cerevisiae,Saccharomyces_bayanus	0,18
Saccharomyces_cerevisiae,Candida_glabrata	0,22
Saccharomyces_cerevisiae,Naumovia_castellii	862,0
Saccharomyces_cerevisiae,Lachancea_waltii	0,29
Saccharomyces_cerevisiae,Candida_albicans	0,53
Saccharomyces_cerevisiae,Yarrowia_lipolytica	0,26
Saccharomyces_cerevisiae,Neurospora_crassa	0,169

Tip

• an internal branch / node is identified by the names of two leaf nodes; the former is the last common ancestor of the latter
• the values of an internal branches are separated by ",", e.g. 0,19
• the number of values of all internal nodes should be the same (two in this dataset)
• the same number of colors should be provided by "!colors" ("#9F0251,#4D8963" in this case)
• and the same number of "groups" should also provided by "!groups"

Example

Example 2

# for evolview; Yeast
## created at may 25, 2011
!Groups	WGD-O,WGD-N,SSD-O,SSD-N
!colors	#9F0251,#f88ef9,#effc00,#4D8963
!legendstyle	circle
!title	overlap with other duplicates
!opacity	0.8
Saccharomyces_cerevisiae,Saccharomyces_paradoxus	0,0,24,14
Saccharomyces_cerevisiae,Saccharomyces_mikatae	0,0,14,11
Saccharomyces_cerevisiae,Saccharomyces_bayanus	0,0,13,16
Saccharomyces_cerevisiae,Candida_glabrata	0,0,4,18
Saccharomyces_cerevisiae,Naumovia_castellii	77,792,0,0
Saccharomyces_cerevisiae,Lachancea_waltii	0,0,12,28
Saccharomyces_cerevisiae,Candida_albicans	0,0,18,42
Saccharomyces_cerevisiae,Yarrowia_lipolytica	0,0,11,16
Saccharomyces_cerevisiae,Neurospora_crassa	0,0,28,143

Show data values

modifiers	alternative value	description
show = 1	0	show or hide data values; optional; the data values will be shown if omitted
fontsize=12	any integer	set font size; optional; default = 10
fontcolor=red	any valid HTML color name such as 'darkred' and hex color code such as '#FF0000'	set text color; optional; default = black
fontitalic=1	0	set font italic; optional; default = 0

Example

Example 3

## for evolview; Yeast
## created at may 25, 2011
!Groups	WGD-O,WGD-N,SSD-O,SSD_N
!colors	#9F0251,#f88ef9,#effc00,#4D8963
!legendstyle	rect
!title	overlap with WGDs
!opacity	0.8
!showlegends	0
!showDataValue	show=1,fontsize=12,fontcolor=darkblue,titalic=1
Saccharomyces_cerevisiae,Saccharomyces_paradoxus	0,0,11,27
Saccharomyces_cerevisiae,Saccharomyces_mikatae	0,0,0,25
Saccharomyces_cerevisiae,Saccharomyces_bayanus	0,0,4,25
Saccharomyces_cerevisiae,Candida_glabrata	0,0,2,20
Saccharomyces_cerevisiae,Naumovia_castellii	869,0,0,0
Saccharomyces_cerevisiae,Lachancea_waltii	0,0,0,40
Saccharomyces_cerevisiae,Candida_albicans	0,0,9,51
Saccharomyces_cerevisiae,Yarrowia_lipolytica	0,0,7,20
Saccharomyces_cerevisiae,Neurospora_crassa	0,0,20,151